4,882 research outputs found

    Dynamics of multi-frequency minority games

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    The dynamics of minority games with agents trading on different time scales is studied via dynamical mean-field theory. We analyze the case where the agents' decision-making process is deterministic and its stochastic generalization with finite heterogeneous learning rates. In each case, we characterize the macroscopic properties of the steady states resulting from different frequency and learning rate distributions and calculate the corresponding phase diagrams. Finally, the different roles played by regular and occasional traders, as well as their impact on the system's global efficiency, are discussed.Comment: 9 pages, 5 figure

    Percolation and lack of self-averaging in a frustrated evolutionary model

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    We present a stochastic evolutionary model obtained through a perturbation of Kauffman's maximally rugged model, which is recovered as a special case. Our main results are: (i) existence of a percolation-like phase transition in the finite phase space case; (ii) existence of non self-averaging effects in the thermodynamic limit. Lack of self-averaging emerges from a fragmentation of the space of all possible evolutions, analogous to that of a geometrically broken object. Thus the model turns out to be exactly solvable in the thermodynamic limit.Comment: 22 pages, 1 figur

    Quantifying the entropic cost of cellular growth control

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    We quantify the amount of regulation required to control growth in living cells by a Maximum Entropy approach to the space of underlying metabolic states described by genome-scale models. Results obtained for E. coli and human cells are consistent with experiments and point to different regulatory strategies by which growth can be fostered or repressed. Moreover we explicitly connect the `inverse temperature' that controls MaxEnt distributions to the growth dynamics, showing that the initial size of a colony may be crucial in determining how an exponentially growing population organizes the phenotypic space.Comment: 3 page

    Statistics of optimal information flow in ensembles of regulatory motifs

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    Genetic regulatory circuits universally cope with different sources of noise that limit their ability to coordinate input and output signals. In many cases, optimal regulatory performance can be thought to correspond to configurations of variables and parameters that maximize the mutual information between inputs and outputs. Such optima have been well characterized in several biologically relevant cases over the past decade. Here we use methods of statistical field theory to calculate the statistics of the maximal mutual information (the `capacity') achievable by tuning the input variable only in an ensemble of regulatory motifs, such that a single controller regulates N targets. Assuming (i) sufficiently large N, (ii) quenched random kinetic parameters, and (iii) small noise affecting the input-output channels, we can accurately reproduce numerical simulations both for the mean capacity and for the whole distribution. Our results provide insight into the inherent variability in effectiveness occurring in regulatory systems with heterogeneous kinetic parameters.Comment: 14 pages, 6 figure

    Quantitative constraint-based computational model of tumor-to-stroma coupling via lactate shuttle

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    Cancer cells utilize large amounts of ATP to sustain growth, relying primarily on non-oxidative, fermentative pathways for its production. In many types of cancers this leads, even in the presence of oxygen, to the secretion of carbon equivalents (usually in the form of lactate) in the cell’s surroundings, a feature known as the Warburg effect. While the molecular basis of this phenomenon are still to be elucidated, it is clear that the spilling of energy resources contributes to creating a peculiar microenvironment for tumors, possibly characterized by a degree of toxicity. This suggests that mechanisms for recycling the fermentation products (e.g. a lactate shuttle) may be active, effectively inducing a mutually beneficial metabolic coupling between aberrant and non-aberrant cells. Here we analyze this scenario through a large-scale in silico metabolic model of interacting human cells. By going beyond the cell-autonomous description, we show that elementary physico- chemical constraints indeed favor the establishment of such a coupling under very broad conditions. The characterization we obtained by tuning the aberrant cell’s demand for ATP, amino-acids and fatty acids and/or the imbalance in nutrient partitioning provides quantitative support to the idea that synergistic multi-cell effects play a central role in cancer sustainmen

    On the interplay between fluctuations and efficiency in a model economy with heterogeneous adaptive consumers

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    We discuss the stationary states of a model economy in which NN heterogeneous adaptive consumers purchase commodity bundles repeatedly from PP sellers. The system undergoes a transition from an inefficient to an efficient state as the number of consumers increases. In the latter phase, however, price fluctuations may be much larger than in the inefficient regime. Results from dynamical mean-field theory obtained for N→∞N\to\infty compare fairly well with computer simulations.Comment: prepared for the proceedings of Fluctuations and Noise 200
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